15 June 2016

Lecture #19: The DNA-CONTAINING VIRUSES




******  The PARVOVIRUSES  ******   

Characteristics of the virus:

1.       They are non–enveloped viruses, with icosahedral symmetry, about 22 nm in diameter
2.       They have a single stranded nucleic acid. A “hairpin” loop at the end of each genome initiates replication of the complementary strand. The single strand DNA is 5.5 Kb long.

Parvoviruses infecting humans:

1.       Dependoviruses – non–pathogenic, adeno–associated viruses.
2.       Parvoviruses – B–19 – causes Erythema infectiosum; aplastic crises
– RA–1 – possible implication in rheumatoid arthritis.

Diseases associated:

1.      Erythema infectiosum

Also known as “slapped cheek syndrome” or “fifth disease” (because it is included in the sixth exanthematous illness of childhood; the others are: measles, rubella, Scarlet Fever, Exanthem subitum and Duke’s disease)

It is characterized by maculopapular rash over the malar areas followed within the next 4 days by a rash on the trunk and limbs which may persist for 2 or 3 weeks. The incubation period is 13–18 days. There may be some fever and malaise in the early stages and mild febrile illness without rash is common.

Adults, particularly women may also be infected with the involvement of the joints, hand and fingers are also affected by arthropy of the arms, legs and spine are more pronounced. Arthralgia may persist for a few weeks but there appear to be no long–term sequelae. Infection in pregnancy may result in fetal death.


2.      Aplastic crisis

Characterized by low hemoglobin value and disappearance of circulating reticulocytes. This is because the virus replicates in and damages the rapidly dividing late normoblast.

Laboratory diagnosis:

1.       Electron Microscopy
2.       Detection of IgM antibody by ELISA and RIA

Pathogenesis and epidemiology

1.       After primary infection of the upper respiratory tract, there is viremia lasting about a week. Clearance of virus from the blood coincides with a sharp IgM antibody response, followed shortly by the appearance of IgG antibody.
2.       Epidemics occur during late winter and early spring and mainly affect young school children.


******  The HEPADNAVIRUSES  ****** 


Characteristics of the virus:

1.       By electron microscopy, two shapes are revealed:

a.       Consist of complete virion or Dane particle, 42 nm in diameter and is double–shelled.
b.       The other are spherical or tubules, 20–22 nm in diameter; they consist only of excess surface antigen, i.e., the glycoprotein forming the outer layer of the double–shelled Dane particle. The core of which is icosahedral nucleocapsid containing:

(1)  The DNA genome (double stranded)
(2)  A DNA–dependent polymerase involved in replication
(3)  Hepatitis B core antigen (HbcAg)
(4)  Hepatitis B envelop antigen (HbeAg)

2.       It belongs to the Family Hepadnaviridae (Hepatitis DNA virus). It infects humans but also ducks, chipmunks and squirrels.

3.       It causes disease known as Hepatitis B infection.

Serological markers of Hepatitis B infection

                                Markers                            Remarks                                           Present in

                                Antigens

1.       HBsAg                          surface antigen,                               acute and chronic infections,
not infective                                      including antigenemia 

2.       HBeAg                          found in core of virion                 acute and chronic hepatitis
Presence in blood indicates
infectivity

§  HBcAg, the core antigen, is not readily detectable in blood and is not used as a marker.

                                Antibodies

1.       Anti – HBs                  indicates recovery;                        convalescence
2.       Anti – HBe                  presence indicates little               convalescence
or no infectivity
3.       Anti – HBc                  in IgM forms, indicates                 the first antibody to appear;
recent infection                               persist in IgG form for life

Mode of transmission:

1.       Transmitted only in blood and body fluids, including cervical secretions and semen.
2.       Sexual intercourse, particularly among male homosexuals.
3.       Intravenous drug abusers by sharing of needles and syringes.

Pathogenesis:

1.      Postnatal infections

a.      Acute infections – subclinical, especially in young children or in those with impaired immunity. However, after an incubation period of 2–3 months, there is prodromal phase similar to that of Hepatitis A, but sometimes marked by a transient rash and anthropathy, probably due to virus–antibody interaction. This is followed by overt, jaundice, after which 90% of patients recover uneventfully within a month or so. In others, the outcome may be chronic infections or rapid death.

Other signs and symptoms include:

(1)  Elevated serum transaminases and HbsAg
(2)  Elevated HBeAg and DNA polymerase
(3)  Appearance of anti–HBc followed by anti–HBe (a good prognostic sign since its production heralds the disappearance of HbeAg and thus infectivity)

·         HBsAg is the first antigen to appear while the anti–HBs are the last antibody to appear. The arrival of anti–HBs indicates complete recover and immunity to reinfection.

Fulminant hepatitis – result of an abnormally active destruction of infected hepatocytes by cytotoxic T lymphocytes. Usually infected are females who die within 10 days in hepatic coma.

b.      Chronic carriers – occurs in 10% of patient’s which appears when the serological profile has not reverted to the normal post–recovery pattern within six months of onset. It has three varieties:

(1)  Chronic antigenemia – patient fails to form anti–HBs and the appearance of anti– HBe may be delayed. Although HbsAg persists in the blood for many years, liver function is normal, the patient is well and is of little or no danger to others. This picture is often seen in those with impaired immunity. The serological pattern is similar in chronic persistent hepatitis, in which , however, there is a mild degree of liver damage.

(2)  Chronic aggressive (active) hepatitis – patient fails to produce either anti–HBs or anti–HBe, as a result they continue to carry both HBsAg and infectious virions in their blood and are thus infectious for others and are referred to as supercarriers. There is significant damage to the liver parenchyma and raised transaminase levels. These patients are liable to repeat episodes of hepatitis and are at risk of developing cirrhosis; some may eventually succumb to malignant disease of the liver.

(3)  Hepatocellular carcinoma or primary liver cancer – result of integration of viral genome into the DNA of hepatocytes. This happens only after a chronic infection with continuing production of complete virions has been in progress for at least 2 years.

2.      Perinatal infections

a.      HBeAg – positive carriers are at risk of cirrhosis of the liver and the hepatocellular carcinoma. Babies acquiring the infection at birth nearly all come into the category.

Laboratory diagnosis:

1.      Specific test

a.       Reverse passive hemagglutination
b.       Latex slide test
c.       HbsAg by ELISA
d.       Electron microscopy

2.      Non–specific test

a.       Alanin aminotransferase (ALT) test
b.       Prothrombin Time
c.       Bilirubin assay

Treatment, epidemiology and control:

1.       Alpha–interferon is the treatment of choice; however, DNA polymerase inhibitors like vidarabine, acyclovir, and foscarnet have been tried.

2.       It is estimated that there are 200 million HBV carriers in the world; of these, 75% were infected at birth.

3.       Control measures include active immunization of “first generation” vaccines prepared from the blood plasma of carriers given intramuscularly at 0,1 and 6 months with booster at 5 year intervals. Human immunoglobulin with a hight titre anti–HBs (HBIG) can be used to provide immediate passive protection:

a.       With vaccine, for infants born to carrier mothers.
b.       For health care staff who suffer “needle stick” or other penetrating injuries while attending actual or suspected high–risk patients.


 ****** The PAPOVAVIRUSES  ******


Characteristics of the virus in general:

1.       The name itself is an acronym for:

a.       pa – papillomavirus (55 nm in diameter)
b.       po – polyomavirus (45 nm in diameter)
c.       va – vacuolating agents
·          – oma – a suffix meaning tumors

2.       Their virion are icosahedral and has no envelope.

3.       The genomes are circular double stranded DNA and code for a comparatively small number of polypeptides.

4.       Replication takes place within the host – cell nucleus except for papillomavirus which multiply in differentiating stratified squamous epithelium.


THE PAPILLOMAVIRUS


                Specific characteristics:

1.       They are classified on the basis of their degree of DNA homology, i.e., on how closely their nucleotide sequences correspond.
2.       There are 60 types of human papillomavirus (HPV) which has been identified.
3.       They cause disease only on skin and mucous membrane.

Types of lesions produced by HPV:

1.      Benign lesions

a.      Cutaneous warts

Mode of transmission:

(1)  Through infected skin, either by direct contact or through fomites and enters its new host through abrasions.

(2)  Through swimming pools and changing rooms.

Types of cutaneous warts

(1)  Common warts (verruca vulgaris) – has a characteristically roughened surface; the excrescences are usually a few millimeters in diameters and may occur in quite large numbers anywhere on the skin, but especially on hands, knees and feet.


(2)  Flat warts (verruca planae) – are flatter and smoother than common warts and predominantly affects young children.


(3)  Butcher’s warts – cause by HPV–7 and is an occupational hazard, it has no relationship with bovine papillomavirus (BPV).

b.      Genital warts or condylomata acuminate – they are fleshy, moist and vascular and may grow much larger than the common in skin warts.


Mode of transmission:

(1)  Through sexual contact
(2)  Through vaginal contact in delivery cases

Sites in men:

(1)  On the penis, affecting the area around the glans and prepuce more than the shaft.
(2)  Within the urethral meatus and urethra itself.
(3)  Around the anus and within the rectum, particularly in homosexuals practicing receptive anal intercourse.

Sites in woman:

(1)  On the vulva
(2)  Occasionally, in the vagina
(3)  On the cervix. Here, the typical lesion is the flat, intraepithelial type, rather than the fleshy variety seen on the external genitalia. It is difficult to distinguish clinically between this lesion, caused by a papillomavirus and other forms of cervical dysplasia.
(4)  Around the anus and perineum.

2.      Malignant lesions

a.      Bowenoid papulosis – manifested by multiple papules on the penis or vulva (name taken from Bowen’s disease thought not associated).


b.      Premalignant intra–epithelial dysplasia – cause by HPV 16 and 18 and cause carcinoma of penis and cervix

(1)  Vulvar Intraepithelial Neoplasia (VIN)
(2)  Vagina Intraepithelial Neoplasia (VAIN)
(3)  Cervix Intraepithelial Neoplasm (CIN)

c.       Laryngeal infection – cause by HPV 6, 11 and 16.

d.      Epidermodysplasia verruciformis – a rare autosomal recessive disease associated with T cell defects, function and number.


Clinical features of papillomavirus lesions

1.      Hyperkeratosis – massive proliferation of the keratinized layers of the dermis. Large, pale, vacuolated cells are present in the granular layer. There are also eosinophilic cytoplasmic inclusions which are not of viral origin but which consist of abnormally large keratohyalin granules. Basophilic inclusions in the nuclei of the epidermal cells in which typical papillomavirus virions can be seen by electron microscopy.

e.g.  flat warts, common warts

2.      Koilocytes or empty cells – vacuolated cells in cervical scrapings.

e.g. condylomata acuminata

                Laboratory diagnosis:

1.       Papanicolau staining of smear
2.       Antiserum against disrupted BPV particles – for HPV but not its type.

Treatment:

1.      For skin warts

a.       Podophyllin – extracted from roots of the American mandrake
b.       Freezing with liquid nitrogen

2.      For cervical lesions

a.       Freezing
b.       Electrodiathermy
c.       Cone biopsy
d.       Injection of interferon

THE POLYOMAVIRUS

                Specific characteristics:

1.       Poly – oma means “many tumors.”
2.       They have oncogenic potential (ability to cause malignant cells or tumors)
3.       They have the ability to grown and induce cytopathic effects in cultured cells, notably those from embryo mice.

Associated diseases:

1.       JC virus – primarily affects senile patients, it causes persistent infection, primarily in the urinary tract, until stirred into more dangerous activity by immunosuppression. It causes a disease known as progressive multifocal leukoencephalopathy (PML).

Clinical features:

a.       Chronic lymphatic leukemia
b.       Hodgkin’s disease
c.       Demyelination
d.       Abnormal oligodendrocytes
e.       Astrocytosis

2.       BK Virus – isolated from the urine of an immunocompromised renal transplant patient. It readily grows in monkey kidney (VERO) cells.

3.       SV 40 virus or Simian Vacuolating viruses – oncogenic for hamsters but not in monkey where it was first isolated. It is resistant to formalin which is used in inactivating polio vaccine.

4.       Merkel cell polyomavirus (MCV) – is the causative agent of Merkel cell carcinoma, a rare but aggressive form of skin cancer.

5.       Trichodysplasia spinulosa–associated polyomavirus – causative agent of trichodysplasia spinulosa, a rare skin disease only seen in immunocompromised patients.


******  The ADENOVIRUSES  ****** 


Characteristics of the virus:

1.       They have an icosahedral DNA, 80 nm in diameter.
2.       The capsid is formed from 252 capsomeres, which are arranged in icosahedron with 20 sides and 12 ventrices (with slender fiber projections).
3.       The CELO (chick embryo lethal orphan) virus, an avian adenovirus which is used for vaccine production causes cancer in animals.
4.       It has an incubation period of 5–10 days.

Two generas of Adenovirus:

1.       Avian adenovirus
2.       Human adenovirus

Classification of Human Adenovirus:

                Subgroup                         Representative Virus                               Target organ
               
                A                                             12, 18, 31                                                            Gastrointestinal Tract
                B                                             3, 7, 11, 21                                                          Pharynx, Lungs, Urinary Tract,
                                                                                                                                                Conjuntiva
                C                                             1, 2, 5, 6                                                               Pharynx
                D                                             8, 9, 19                                                                 Eye
                E                                             4                                                                             Upper Respiratory Tract
                F                                             40, 41                                                                   Gastrointestinal Tract

Other adenovirus associated diseases:

1.       Acute intussusception in infants
2.       Necrotizing enterocolitis
3.       Acute cystitis
4.       Meningoencephalitis
5.       Pneumonia

Laboratory diagnosis:

1.       Cell culture using Human diploid, HeLa, Hep–2 medium – the pH of the medium usually falls rapidly as the virus – infected cells become swollen, rounded and refractile, clustering together like bunches of grapes.


******  The HERPESVIRUSES  ****** 


Characteristics of the virus:

1.       The morphology of all herpesviruses is similar and distinctive. Although they share a number of antigens, they can be distinguished by difference in their genomes and by serological tests.

2.       They are distinguished by electron microscopy by their large baggy envelope. Unenveloped particles may also be present.

3.       They have an icosahedral nucleocapsid. The virion are 120–200 nm in diameter.

4.       The genome is double stranded DNA and codes for about 100 polypeptides. HSV–1, HSV–2 and VZV code for thymidase kinase, a phosphorylating enzyme which helps to mediate the action of certain antiviral drugs.

Classification of Human Herpesviruses:

                Subfamily                                         Virus                                                                   Abbreviation

                Alphaherpesvirus                           Herpes simplex virus type 1                      HSV–1
                                                                                Herpes simplex virus type 2                      HSV–2
                                                                                Varicella zoster virus                                    VZV

                Betaherpesvirus                              Cytomegalovirus                                            CMV
                                                                                Human Herpes virus type 6                       HHV–6
                                                                                Human Herpes virus type 7                       HHV–7

                Gammaherpesvirus                       Epstein–Barr virus                                         EBV

HERPES SIMPLEX VIRUS (HSV)

                Two varieties:

1.       HSV–1 – primarily affects the upper part of the body
2.       HSV–2 – usually but not extensively causes genital infection.

Types of infection produced by HSV

1.      Primary infection – refers to the first infection with either HSV. Since there is little cross –protection between HSV–1 and HSV–2 it is impossible to be infected later with other variety; to distinguish it from a primary infection in a completely non–immune person, such an episode is known as an initial infection.
2.      Reactivation – production of infective virus by latently–infected cell.
3.      Recurrence / Recrudescence – result of clinically apparent disease.

Diseases produced by HSV:

1.      Oropharyngeal infection – primary infection is acquired through oral contact of infant with adult by kiss. It maybe asymptomatic otherwise it may present as acute gingivostomatitis characterized by vesicle on gums and oral mucosa ulcers. The time of onset to healing is 2 weeks.

Recurrence is characterized by a cluster of vesicles around the mouth with itching sensation. The lesion is often watery. They are milder, more localized and of shorter duration than primary infection.

2.      Dermal infection

a.       Herpetic whitlow – a lesion on a finger which is very painful but heals without treatment. Opening such lesion must be discourage since it contains not pus but necrotic material and incision tends to spread the infection.


b.       Eczema herpeticum – an infection acquired by people.


3.      Genital infection

a.       Herpetic proctitis with meningitis is sometimes seen in male homosexuals. The pain presents a crop of vesicles, lesions also occur in meatus causing dysuria.

b.       Cervicitis with vesicular in females. Lesions are found in labia, vulva and perineum, sometimes extending to the inner surface of thighs.

c.       Herpetic vulvovaginitis in children occurs as an indication of sexual abuse though it may also be a result of auto–inoculation from oral lesions.

4.      Ophthalmic infection

a.       Herpetic keratoconjuctivitis – characterized by dendritic ulcers.
b.       Disciform keratitis



c.       Iridocyclitis

5.      Encephalitis – characterized by fever and malaise lasting a few days followed by headache and changes in behavior. Clouding of consciousness proceeding to coma is a bad prognostic sign.

Laboratory diagnosis:

1.       Immunofluorescent staining – using monoclonal antibodies
2.       Electron microscopy – a drop of fluid is taken by opening the top of a vesicle with a large gauge needle or the point of a scalpel blade, spreading it on an ordinary microscope slide and observing for characteristic morphology.

VARICELLA–ZOSTER VIRUS (VZV)

                Disease produced by VSV:

1.       Varicella – causes chickenpox
2.       Herpes Zoster – causes shingles or hives

Clinical manifestations of Varicella:

1.       Incubation period: 2 weeks but may vary by several days
2.       In children, rash and mild feverish illness
3.       In adults, a rash is centripetal (confined on face and trunks than on limbs). It first appears as flat macules, which rapidly become raised into papules; these are succeeded by vesicles, which finally form crusts that are shed from skin.
4.       Transmitted by respiratory route.

Complications of Varicella infection:

1.       Bacterial infection of the vesicular fluid leading to pustule formation.
2.       Hemorrhage in patients with thrombocytopenia
3.       Post–infection encephalitis
4.       Varicella pneumonitis in leukemic children
5.       Generalized varicella (involvement of viscera, joints and CNS)
6.       Congenital and neonatal infections resulting in a severe scarring of the skin with hydrocephalus and other malformations.

Clinical manifestations of Zoster:

“Zoster” is derived from the Latin word for a belt or girdle and refers to the characteristic distribution of the rash when a thoracic dermatome is involved. The attack is heralded by hyperaesthesia and sometimes by pain in the affected area, followed within a day or so by a crop of typical herpetic vesicles which eventually crust over and heal in the usual way.

CYTOMEGALOVIRUS (CMV)


                Category of patient                   Mode of infection

                Fetus                                                     from mother, across the placenta
                Infant                                                   contact with maternal body fluids during birth;
                                                                                Breast–feeding (colostrum)
                Young child                                       Contact with urine or saliva of other children
                Adolescent and adults                   kissing; sexual intercourse; blood transfusion
                Transplant recipient                      Exogenous – through donated tissues and blood transfusion
                                                                                Endogenous – reactivation due to immunosuppression

                Diseases produced by CMV:

1.       Glomerulonephritis with rejection of transplanted kidney
2.       Febrile illness
3.       Interstitial pneumonitis with edema and pronounced cellular infiltration

EPSTEIN–BARR VIRUS (EBV)

                Two varieties:

1.       EBV–A
2.       EBV–B – more prevalent

EBV antigens:

1.       EB viral nuclear antigen (EBNA) – found in nuclei of cells.
2.       Lymphocyte detected membrane antigen (LYOMA) – hard to stain but is the target for cytotoxic T cells.
3.       “Early” membrane antigen
4.       Viral capsid antigen (VCA)
5.       “Late” membrane antigen

EBV antibodies useful in diagnosis

1.       Anti–EA
2.       Anti–VCA

Diseases associated with EBV

1.       Infectious mononucleosis (IM) or Glandular Fever – transmitted by oral route and primarily affects adolescents and young adults. The incubation period is a month or more. There is fever, pharyngitis and enlargement of the lymph nodes, first in the neck and later elsewhere. In most patients, the spleen is palpable and there is some liver dysfunction, occasionally with frank jaundice. There may be transient macular rash; it is a peculiarity of the disease that patients given ampicillin develop a more severe rash due to the formation by transformed B cells of antibody to this antibiotic.
Complications include Guillain–Barre’ syndrome with CNS involvement and rarely, ruptures of spleen.




2.       Burkitt’s Lymphoma (BL) – hyperendemic in children in Africa with ages 6–7 years old. It presents as a tumor of the jaw, less often of the orbit and other sites. This highly malignant neoplasm is responsive to cyclophosphamide which, if given early enough, may affect a cure.


3.       Nasopharyngeal Carcinoma (NPC) – prevalent in Southern China affecting 20–50 years old males usually. This neoplasm is similar to BL. It is also said to be associate with certain Human Leukocyte Antigen (HLA) haplotypes and high consumptions of nitrosamine in salted foods.

Laboratory diagnosis depends on:

1.       Raised leukocyte count and atypical T lymphocytes in the blood film.
2.       Presence of heterophil (Formann) antibodies detectable by Paul–Bunnell or Monospot hemagglutination test.

HUMAN HERPESVIRUS (HHV)

1.      HHV–6 – first isolated in 1986. It causes:

a.       Exanthema subitum or Roseala infantum – characterized by rash in young children with mild febrile illness.



b.       Lymphadenopathy in adults

2.      HHV–7 – isolated in mononuclear cells in blood of healthy individual but not associated with any disease

Laboratory diagnosis:

1.       IgG antibody
2.       IgM antibody
3.       Cell culture in lymphoid cell line


******  The POXVIRUSES  ****** 

Characteristics of the virus:

1.       The largest virus of all measuring 230 x 270 nm and when suitably stained can be seen with an ordinary microscope.
2.       Their structure is complex. They are either icosahedral or helical. The capsid is consist of network of tubules and is sometimes surrounded by an envelope.
3.       Their nucleic acid is double stranded.
4.       They replicated only in the cytoplasm in which they form Inclusion Bodies.

Classification of Human Poxviruses:

                Genus                                  Virus                   Primary Host                                 Clinical features in human

                Orthopoxvirus                                 Variola                 Man                                       Smallpox
                                                                Vaccinia              Man, cattle, cats,              vesicular vaccination lesion
                                                                Cowpox               Rodents                               Lesion in hands
                                                                Monkeypox       Monkeys, squirrels         resembles smallpox
                Parapoxvirus                    pseudocowpox                                Cattle                    Localized nodular lesion
                                                                Orf                                         Sheep, goats       Localized
                                                                                                                                                Vesicogranulomatous lesion
                Unclassified                       Tanapox              monkeys                             vesicular skin lesion and
                                                                                                                                                Febrile Illness
                                                                Molluscum         Man                                       multiple small skin nodules

Diseases associated with Poxvirus

1.      Smallpox

Two varieties:    a.   Variola major          b.            Variola Minor or alastrim

Signs and symptoms:

It has an incubation period of 10–12 days, with a range of 8–17 days; a febrile illness of sudden onset lasting 3–4 days was followed by the appearance of a rash progressing from macules to papules, vesicles and pustules which then forms crusts. The distribution of the rash is centrifugal (affects extremities).

2.      Molluscum contagiosum – characterized by small nodular lesions, mostly on trunks. They become umbilicated and contain caseous material in which “molluscum bodies” can be readily demonstrated. These are quite large (30 µm long) ovoid structure containing many virions. It is transmitted via skin abrasion or sexual penetration. Cryotherapy, curettage or treatment with caustic agents such as phenol helps eradicate the disease.
                                                
               






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